PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g066730.2
Common NameMTR_8g066730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 291aa    MW: 30644.6 Da    PI: 7.6729
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g066730.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-0893117126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC+ f+  GtC+y  +C+FaH+
  Medtr8g066730.2  93 FKTKLCCKFRV-GTCPYITNCNFAHS 117
                      69*********.*************8 PP
2zf-CCCH192.5e-06169194126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd+C+F H+
  Medtr8g066730.2 169 YKGRHCKKFYTEEGCPYGDSCTFLHD 194
                      78888********************7 PP
3zf-CCCH43.36.1e-14257282126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Medtr8g066730.2 257 WKTRICNKWEMTGYCPFGNKCHFAHG 282
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.85E-890123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-1490125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.13692119IPR000571Zinc finger, CCCH-type
SMARTSM003560.003292118IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-10164196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-8165196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.086168195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-15252283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-9254283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309256284IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9256283IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-11257282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDYNRDGNVV QIITTGGGGA ADSWSTDQAD WATEDEYRYW NGNDAGGETT PSSNSRAGSE  60
PPSKKSRSNS QDGGGGGSGG GSNRAKAIGK MFFKTKLCCK FRVGTCPYIT NCNFAHSVEE  120
LRRPPENWQE IVAAHEEERS VIEQPREEFQ IPTVGSSTFV GESMNNRSYK GRHCKKFYTE  180
EGCPYGDSCT FLHDEQSKNR ESVAISLGPG GYGGGGGGGG GGGGSVGSGV GSGSGVVVVA  240
AGAAAVGNGP NLKPSNWKTR ICNKWEMTGY CPFGNKCHFA HGATAKLRWH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g066730.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482370.0AC148237.7 Medicago truncatula chromosome 8 clone mth2-1o14, complete sequence.
GenBankAC1496390.0AC149639.23 Medicago truncatula chromosome 8 clone mth2-154b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628788.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM32e-97C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A072TT840.0A0A072TT84_MEDTR; Zinc finger CCCH domain protein
STRINGAET032640.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.19e-95C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]