PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g066310.1
Common NameMTR_8g066310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 356aa    MW: 39724 Da    PI: 7.9161
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g066310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32174227255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Medtr8g066310.1 174 PRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRT 227
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.18E-15171227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28172227IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-24174227IPR006447Myb domain, plants
PfamPF002491.0E-7175226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELFPAQPDL SLQISLPNSK QTSSWRRNTD DQEELNDLGF WKRALESKTD ANYTFDPTLS  60
NLRAPSSSSS SSNLYNLIPN PFQNTNNSNN NSFQPFHRKQ NNYQSLSDEL GFLKPIRGIP  120
VYHQNPNPPI ALFSQPQPPF DASTSSSPAA FHPHTSMRSK LLPRFPSKRS VRAPRMRWTT  180
TLHNRFVHAV ELLGGHERAT PKSVLELMDV KDLTLSHVKS HLQMYRTVKI TDRPPASSGQ  240
SDMYDNGSSG ETSEDLMLDI NSSTRSNDLP VKLDAEITNQ DKEKHSIWSN SSSNREAWLH  300
GKPKVHPVGN VSSIEEMDPK CVSNERYSSD GSSSSNISGT SLKNPNLEFT LGNSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-17175229458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g066310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1505050.0AC150505.12 Medicago truncatula chromosome 8 clone mth2-99l2, complete sequence.
GenBankAC1506470.0AC150647.13 Medicago truncatula chromosome 8 clone mth2-65p21, complete sequence.
GenBankAC1743780.0AC174378.11 Medicago truncatula chromosome 8 clone mth2-57m5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628747.20.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6163e-85KAN2_ARATH; Probable transcription factor KAN2
TrEMBLG7LGX40.0G7LGX4_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAET032230.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-65G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]