PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g066240.1 | ||||||||
Common Name | MTR_8g066240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SBP | ||||||||
Protein Properties | Length: 106aa MW: 11308.7 Da PI: 10.373 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 48.2 | 2.8e-15 | 64 | 102 | 4 | 42 |
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 ++gC+adls+ + yh rhkvC+ hsk+++v++ g++qrf Medtr8g066240.1 64 ADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 102 689***********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-14 | 56 | 103 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 12.383 | 59 | 105 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-10 | 64 | 102 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.68E-14 | 64 | 102 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MCANEFFVDL KLGHVGNSSA ESGLTKSKDV GGFTKITSSS SSTSGSSKKA RAINNGTQIV 60 SSLADGCQAD LSNYRGYHMR HKVCKLHSKT SQVTLGGHKQ RFFFF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g066240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144726 | 1e-178 | AC144726.6 Medicago truncatula chromosome 8 clone mth2-7k13, complete sequence. | |||
GenBank | AC150505 | 1e-178 | AC150505.12 Medicago truncatula chromosome 8 clone mth2-99l2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024628067.1 | 4e-45 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
TrEMBL | G7LGA2 | 5e-70 | G7LGA2_MEDTR; Squamosa promoter-binding 13A-like protein | ||||
STRING | AET03216 | 9e-71 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31898 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 5e-16 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g066240.1 |
Entrez Gene | 11419498 |
Publications ? help Back to Top | |||
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