PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g063870.1
Common NameMTR_8g063870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 274aa    MW: 30160.8 Da    PI: 8.2169
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g063870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10752346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ e  +l+  a + ++ +   +W++Ia+ ++ g+tl+q+k+++  
  Medtr8g063870.1  7 EWSSEQNKLFEYALANYPDDvvdRWEKIAAGVP-GKTLEQIKHHYEV 52
                     7*****************99*************.**********965 PP
2Myb_DNA-binding42.12e-1394137447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT++E+ l++ +v+++G+g Wk+I++    ++t  q+ s+ qky
  Medtr8g063870.1  94 WTEDEHRLFLMGVEKYGKGKWKKISENYVVTKTHTQIASHAQKY 137
                      *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.243358IPR017884SANT domain
SMARTSM007173.2E-6456IPR001005SANT/Myb domain
SuperFamilySSF466895.02E-11662IPR009057Homeodomain-like
PfamPF002491.2E-7751IPR001005SANT/Myb domain
CDDcd001671.09E-7754No hitNo description
PROSITE profilePS5129413.90686142IPR017930Myb domain
SuperFamilySSF466896.39E-1689142IPR009057Homeodomain-like
SMARTSM007171.5E-790140IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.8E-1892139IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.9E-1193139IPR009057Homeodomain-like
CDDcd001672.09E-994138No hitNo description
PfamPF002491.0E-1194137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDEVSSEWSS EQNKLFEYAL ANYPDDVVDR WEKIAAGVPG KTLEQIKHHY EVLVDDIHNI  60
ESGFVPLPDY DSFSNSTKCT IVKKGTKASG SYHWTEDEHR LFLMGVEKYG KGKWKKISEN  120
YVVTKTHTQI ASHAQKYFKG LNSTKEKKER RRSSRHDVTY VENGDISAPH GAITGQASDY  180
ARQSATQTPQ APSAGTRTLN DPPVPPAGMY VVTPPSGVGV YAAHRIGQPI GGRNCTPGQM  240
AYGIGPVSWT SMPGVPMNLG PMTFPMQNTY AHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-188791182RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g063870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445934.10.0transcription factor SRM1
TrEMBLA0A072TS070.0A0A072TS07_MEDTR; Myb-like transcription factor family protein
STRINGAES596961e-112(Medicago truncatula)
STRINGAET031741e-112(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-63MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]