PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g063600.1
Common NameMTR_8g063600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 291aa    MW: 31377.9 Da    PI: 6.3135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g063600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-09953345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ + d+ + +  + ++ +   +W++Ia+ ++ g+tl+++k ++ 
  Medtr8g063600.1  9 EWSRDQDKAFENTLANYPEDavdRWEKIAADVP-GKTLEEIKRHYV 53
                     6********************************.**********96 PP
2Myb_DNA-binding44.24.6e-14107152348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT++E+ l++++ + +G g+W++I+r+   +Rt+ q+ s+ qky+
  Medtr8g063600.1 107 PWTEDEHRLFLQGLENHGWGDWRSISRYSVVTRTPTQVASHAQKYK 152
                      8*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.564560IPR017884SANT domain
SMARTSM007176.4E-6658IPR001005SANT/Myb domain
SuperFamilySSF466896.82E-10964IPR009057Homeodomain-like
CDDcd001676.63E-7952No hitNo description
PfamPF002492.0E-6953IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-4962IPR009057Homeodomain-like
PROSITE profilePS5129419.105100156IPR017930Myb domain
SuperFamilySSF466891.65E-16100157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-10104150IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-15104155IPR006447Myb domain, plants
SMARTSM007171.4E-10104154IPR001005SANT/Myb domain
CDDcd001677.83E-11107152No hitNo description
PfamPF002491.3E-11107152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDEVGSSCEW SRDQDKAFEN TLANYPEDAV DRWEKIAADV PGKTLEEIKR HYVVLFDDIN  60
HIESGFVPLP DYDSFSKSST TCAGEGGAVK KGTKASSSYQ ERRKGVPWTE DEHRLFLQGL  120
ENHGWGDWRS ISRYSVVTRT PTQVASHAQK YKIRQDSMKE KKERRRSSIH DVTFVKNGDI  180
SAPQGPITGQ ASNSAANSAG QSAEQAPPVP PAGIKTLDNP PSPPAGIHAA PRIGQPIGGP  240
VVSAVGTTVN LTAPGDMDYG LGPVSETVMP GVPMNLGPMT YAMLHTYAQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-16572673RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g063600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628698.10.0transcription factor SRM1
SwissprotQ9FNN61e-87SRM1_ARATH; Transcription factor SRM1
TrEMBLG7I7330.0G7I733_MEDTR; Myb-like transcription factor family protein
STRINGAES596960.0(Medicago truncatula)
STRINGAET031740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-87MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]