PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g061040.1
Common NameMTR_8g061040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 376aa    MW: 41631.1 Da    PI: 7.5861
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g061040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.96.4e-071374655
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                     +ft+ +++e+e+   +  n  p ++  + LA+k            ++ +qV +WFqN+R+  
  Medtr8g061040.1 13 RFTQPEVTEMEAILSEhnNAMPARDVLQALADKFsespdrkgkiTVQMKQVWNWFQNKRYAI 74
                     689999999999998655999*********************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0041781IPR001356Homeobox domain
SuperFamilySSF466897.27E-101278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-71381IPR009057Homeodomain-like
PROSITE profilePS500719.2971377IPR001356Homeobox domain
CDDcd000860.003341375No hitNo description
PfamPF000462.4E-41374IPR001356Homeobox domain
PfamPF167193.0E-41129255IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQPEVT EMEAILSEHN NAMPARDVLQ ALADKFSESP DRKGKITVQM  60
KQVWNWFQNK RYAIRAKSSK TPAKLNITPM PRTDLTPGRI MTQPTASPIP APSASVQTTA  120
KAAPENSVME FEAKSGRDGA WYDVATFLSY RHLESSDPEV LVRFAGFGSE EDEWINVRKN  180
VRPRSLPCES SECVAVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDVR GCRCRFLVRY  240
DHDQSEEIVP LRKICRRPET DYRLHQLHAV NDAAPTDQQK IALDHPANVH GARVTNPSEM  300
VQKQQQIANI HIVTPVLQTN VSIPPQSMNV DPMKAETKAD VQAGNSVTPS SAAFTGIIAT  360
SSVPEVSTQN LAEGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A8e-471292594134SHH1 SAWADEE
4iur_B8e-471292594134SHH1 SAWADEE
4iut_A8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B8e-471292594134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.102150.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g061040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447240.0AC144724.9 Medicago truncatula chromosome 8 clone mth2-7g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628534.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-151SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLG7LDQ20.0G7LDQ2_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAET030100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-136sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]