PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g060940.1
Common NameMTR_8g060940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 245aa    MW: 28084.6 Da    PI: 6.056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g060940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Edell+ +++ +G g W++++++ g++R++k+c++rw++yl
  Medtr8g060940.1  9 KGAWTYKEDELLKACINTYGEGKWNLVPQRSGLNRCRKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding54.72.3e-1762106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Medtr8g060940.1  62 RGRFSEDEEDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWHTN 106
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.505156IPR017930Myb domain
SuperFamilySSF466896.6E-297103IPR009057Homeodomain-like
SMARTSM007171.7E-12858IPR001005SANT/Myb domain
PfamPF002491.0E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-211063IPR009057Homeodomain-like
CDDcd001671.39E-81156No hitNo description
PROSITE profilePS5129424.87757111IPR017930Myb domain
SMARTSM007175.9E-1661109IPR001005SANT/Myb domain
PfamPF002499.6E-1662106IPR001005SANT/Myb domain
CDDcd001673.89E-1164107No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2364111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MENTGGVRKG AWTYKEDELL KACINTYGEG KWNLVPQRSG LNRCRKSCRL RWLNYLSPNI  60
NRGRFSEDEE DLILRLHKLL GNRWSLIAGR LPGRTANDVK NYWHTNLAKK VVSEKEEEKE  120
NDKPKETMKA HEVIKPRPIT LSSHSNWLKG KNSIPRDLDY SENMASNQIG RECASTSKPD  180
LGNAPIPCEM WCDSLWNLGE HVDSEKIGSC SSLQEENLME FPNVDDDSFW DFNLCDLNSL  240
WDLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2391117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g060940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1999980.0FJ199998.1 Medicago truncatula MYB transcription factor LAP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628527.11e-180transcription factor MYB90
SwissprotQ9FNV94e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A396GIF71e-179A0A396GIF7_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAET030031e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-54myb domain protein 113
Publications ? help Back to Top
  1. Peel GJ,Pang Y,Modolo LV,Dixon RA
    The LAP1 MYB transcription factor orchestrates anthocyanidin biosynthesis and glycosylation in Medicago.
    Plant J., 2009. 59(1): p. 136-49
    [PMID:19368693]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  4. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]