PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g046350.1 | ||||||||
Common Name | MTR_8g046350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18428.4 Da PI: 7.4172 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.9e-19 | 16 | 57 | 8 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rqvtfskRr g++KKA+EL +LC++++ +++fs+ +k y + Medtr8g046350.1 16 ARQVTFSKRRMGLFKKANELAILCGTKIVIVVFSPGNKPYSF 57 79*********************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-25 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.418 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGRRKIEIAM VKKPEARQVT FSKRRMGLFK KANELAILCG TKIVIVVFSP GNKPYSFGHP 60 SVDAIASKFL QQELDLNDVL ETPSSNIEDL NQQHEKVMAD IAEAEKEDKA NEEMLKEYKS 120 ASPKEWKDSL MELKNMVKSR LCDLDISDSM MLLAKEPVVG IKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-15 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g046350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003628257.1 | 1e-117 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | G7L974 | 1e-115 | G7L974_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AET02733 | 1e-116 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-30 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g046350.1 |
Entrez Gene | 11407751 |
Publications ? help Back to Top | |||
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