PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g044220.1 | ||||||||
Common Name | MTR_123s0013, MTR_8g044220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 440aa MW: 49015.9 Da PI: 6.5079 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119 | 1.7e-37 | 114 | 173 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG +rnvP+G+g+r+nk+s Medtr8g044220.1 114 PDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGVIRNVPIGAGKRRNKQS 173 78999****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 111 | 171 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-31 | 115 | 172 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.425 | 118 | 172 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 120 | 156 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MFHVKEEQQE EDPSIKLFGS DIQIHTPINQ THTTDSQIHS LPHQQSIMNG LEESTNADVE 60 VSSKQVNPQE DANAIPNMYN TGTLKPVTKA VHRTNEHKTA KRDTDNQEKV FKKPDKVLPC 120 PRCNSLETKF CYFNNYNVNQ PRHFCKNCQR YWTAGGVIRN VPIGAGKRRN KQSPLQNCQV 180 PVTLDAVPVI HIDSKEEVPL SESVETVLNL KGHRKIEMDS STVKEDIENS SSSSVRAAES 240 GEMEYSESGI EHVGLTLTPQ CNGLIPLHSL HYYSAPPWTY PCWNPVAFKS DNITSSPATM 300 MTVEVPMTPS YWGCMPNWVG QMEELSLVGS AFNGIPSPSS SPTLGKHCRD GSTQEEDIMK 360 PNIWVPKTIR INDPEEAAKS SIWSTLRTKS EQNKPIMKGS VFKSFEPKSN ASSRDLDDNQ 420 ILRANPAAFS RSGSFQESV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g044220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003628145.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | G8A1Q8 | 0.0 | G8A1Q8_MEDTR; DOF-type zinc finger DNA-binding family protein | ||||
STRING | AES85396 | 0.0 | (Medicago truncatula) | ||||
STRING | AET02621 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-60 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g044220.1 |
Entrez Gene | 11409779 |
Publications ? help Back to Top | |||
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