PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g043960.1

Common Name

MTR_8g043960

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 314aa MW: 35106.5 Da PI: 8.0577

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g043960.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51	3.2e-16	243	292	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+k+ +el+++ Medtr8g043960.1 243 RRQKRMIKNRESAARSRARKQAYTNELEIKVSRLEEENEMLRKR-KELENM 292 79****************************************55.666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.9E-15	231	289	No hit	No description
SMART	SM00338	5.3E-13	239	311	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.243	241	286	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.14E-21	243	297	No hit	No description
Pfam	PF00170	1.7E-13	243	287	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-10	243	288	No hit	No description
PROSITE pattern	PS00036	0	246	261	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGIQTMGSQG GGDGSGKRSQ LHSLVRQNSV YSLTLDEVQN QLGDLGKPLS SMNLDELLKN 60 VWTVEVNQST NTDNEGTAQS SEACLQRQAS LALKAAFSKK TVDEVWRDIQ QKKDSEEKKS 120 RERQTTLGEM TLEDFLVKAG IVAEASSNKT NTDTTAAADS NVAVSQFPSQ GQWIQYPQPQ 180 YQHLQQSSMG IYMPSQSMAQ PLHMGSGVSM EIPFADSHMA LDTQMPGRKR STPEDMVEKT 240 VERRQKRMIK NRESAARSRA RKQAYTNELE IKVSRLEEEN EMLRKRKELE NMLPCAPIAE 300 PKYQLRRIAS CPF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g043960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003628123.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_024627504.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	9e-88	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	G7L6Z1	0.0	G7L6Z1_MEDTR; BZIP transcription factor
STRING	AET02599	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-73	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Medtr8g043960.1
Entrez Gene	11408376

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]