PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g040120.1
Common NameMTR_8g040120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 467aa    MW: 51557.4 Da    PI: 6.8694
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g040120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09179221345
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Medtr8g040120.1 179 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 221
                      568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-8171224No hitNo description
PfamPF077166.7E-7177223IPR004827Basic-leucine zipper domain
SMARTSM003389.6E-8177240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415179223IPR004827Basic-leucine zipper domain
CDDcd147088.51E-22181233No hitNo description
SuperFamilySSF579597.5E-7181224No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
PfamPF141443.1E-33263338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGSRIRVGVE DEKGAERGMP SFNSDDACYT DGNTIDNFHV SDFGAFGQPY RLEDAVALSG  60
NSNSVFNSLK VSGQTISPAP VHTSSLDKLP TSRDKSPLTN QTEPHRLQLT KLQSSNPGSG  120
AILSVHTENQ EEFAMADASP RTDISTDGDT DDKNQRFDRN QSLAVAGSDS SDRSKDKSDQ  180
KTLRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQLEQE LQRARQQGVF ISSSGEQTHS  240
LSGNGAMQFD AEYARWLEEQ NRQINELRAA VNSHASDTEL RMIVDGIVAH YDEIFRLKGV  300
AAKADVFHLL SGMWKTPAER CFLWLGGFRS SELLKLLVNQ LEPLTEQQLM GITNLQQSSQ  360
QAEDALSQGM EALQQSLAET LSTGAPSSSG SSGNVANYMG QMAMAMGKLG TLEGFIRQAD  420
NLRQQTLQQM HRILTTRQSA RALLAIHDYF SRLRALSSLW LARPRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.1600.0glandular trichome| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g040120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1473330.0BT147333.1 Medicago truncatula clone JCVI-FLMt-20A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627926.10.0transcription factor TGA2.2
RefseqXP_024628496.10.0transcription factor TGA2.2
RefseqXP_024628497.10.0transcription factor TGA2.2
RefseqXP_024628498.10.0transcription factor TGA2.2
RefseqXP_024628499.10.0transcription factor TGA2.2
RefseqXP_024628500.10.0transcription factor TGA2.2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLG7LGW20.0G7LGW2_MEDTR; BZIP family transcription factor
STRINGAET024020.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-157TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]