PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g039110.1
Common NameMTR_8g039110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SRS
Protein Properties Length: 328aa    MW: 35781.9 Da    PI: 7.804
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g039110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702183.96.7e-571222856154
           DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 
                        CqdCGn+akkdC+++RCRtCCk rgfdC+thvkstW+pa+ rr+r    a    ++    a++ +kr++ l++++q+++++ + ss+ s+  
  Medtr8g039110.1 122 RVCQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVVAEGGDSDGG--ASSGTKRQKILMTSSQNNVAANSHSSS-SNAA 212
                      47*********************************************7776665444433..455555555553333333222222222.2222 PP

           DUF702 100 letss..................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      + t+s                  lP+ v+++avf+c rvs++ +ge+elaY ++v+i+GhvfkG+LydqG+++
  Medtr8g039110.1 213 TRTRSlslditsschqdpgfkqtLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGVDD 285
                      2222234556668888999999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.4E-54123284IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.0E-26123165IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.0E-23236283IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNMLGLRDLV LIAQTPSSLH NQQNQTISSD HNPNLPLPSS SALSVGLGIF PLLTTTHPHH  60
QNPNNNNNND NIHQDSNFWN LKMCQPQQVM MMNSSRKRVE EEDDDVRNKN LMMGCEENGE  120
FRVCQDCGNR AKKDCSYKRC RTCCKGRGFD CSTHVKSTWI PASMRRDRSM VVAEGGDSDG  180
GASSGTKRQK ILMTSSQNNV AANSHSSSSN AATRTRSLSL DITSSCHQDP GFKQTLPRYV  240
RAPAVFKCHR VSAIGNGEDE LAYLATVNIS GHVFKGFLYD QGVDDKNETM PCVSELQLGS  300
NGSGKSNREC SSSAIEVPTS AYPASAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g039110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627845.10.0protein LATERAL ROOT PRIMORDIUM 1 isoform X2
RefseqXP_024628230.10.0protein LATERAL ROOT PRIMORDIUM 1 isoform X2
TrEMBLG7LG160.0G7LG16_MEDTR; LRP1 carboxy-terminal domain protein
STRINGAET023210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-46Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]