PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g037270.1
Common NameMTR_8g037270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 295aa    MW: 32991.7 Da    PI: 9.8296
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g037270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.6e-32153209158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh+hAlrR+Rg+gGrF
  Medtr8g037270.1 153 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHQHALRRARGNGGRF 209
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.2E-37151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.498152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-27154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-24155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-24186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPGKPETDDW RIEHSEQVQL PSSIYSHHQP WWLENGSKPS SADQLNGSIM NDVTHSEPLV  60
SPSLSLTDNS GGDVAKEHRN IKHTLSSTTA SMDKHLYPNS QRELVGHSIV LTSPYSNAQF  120
GQILNAYGQQ AMMNPQLYQM HHARMLLPLK MEEEPVYVNA KQYHGILRRR QSRAKAELEK  180
KVIKVRKPYL HESRHQHALR RARGNGGRFL NTKKPEHNDS NAALEKGNNT GTTSGTNNEN  240
QGSSNVSQHM HKMQGFNIGY HDGNGFTALC HSQANGKQEG DFFGKKRESN GAIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20153213262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g037270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182720.0JQ918272.1 Medicago truncatula nuclear transcription factor Y subunit A7 (NF-YA7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445060.10.0nuclear transcription factor Y subunit A-4
RefseqXP_024627642.10.0nuclear transcription factor Y subunit A-4
TrEMBLA0A072TPE20.0A0A072TPE2_MEDTR; CCAAT-binding transcription factor
STRINGXP_004510988.11e-160(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-40nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]