PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g036105.1 | ||||||||
Common Name | MTR_8g036105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23579.7 Da PI: 7.5541 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.9 | 4.1e-39 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+C++apyf ++q + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+v++i++lqqq+++l+ae Medtr8g036105.1 18 PCGACKFLRRKCVKGCIFAPYFDSDQgTVHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQVMSLQAE 111 7***********************9988****************************************************************** PP DUF260 94 lallkee 100 l ++++ Medtr8g036105.1 112 LTYVQAT 118 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.791 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-38 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDYCGGKIGG SDQRGGGPCG ACKFLRRKCV KGCIFAPYFD SDQGTVHFAA VHKVFGASNA 60 SKLLMRIPAH KRLDAVVTLC YEALARARDP VYGCVAHIFA LQQQVMSLQA ELTYVQATLA 120 TMQRLPISLA PSLPNPQSSS PSFHSSSDHV GTNADMHSAS NMSMHFDPHQ PLSSLDLSSF 180 FNQSDQQLDD DELQALAREF VSRYLPGVRF QPSNSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 15 | 112 | 8 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 15 | 112 | 8 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22628 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g036105.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052556 | 0.0 | BT052556.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-F-13 unknown mRNA. | |||
GenBank | BT149077 | 0.0 | BT149077.1 Medicago truncatula clone JCVI-FLMt-11C11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445017.1 | 1e-160 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 5e-75 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | B7FKD7 | 1e-158 | B7FKD7_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | XP_004510943.1 | 1e-124 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-69 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g036105.1 |
Entrez Gene | 25501018 |
Publications ? help Back to Top | |||
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