PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g033070.1
Common NameMTR_8g033070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 334aa    MW: 36244.2 Da    PI: 10.1523
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g033070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.25.8e-38761784114
              TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgka 90 
                      k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++                     +  
  Medtr8g033070.1  76 KRSSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvngtlkI-------------PTT 156
                      899***********************************************************8877733321111110.............111 PP

              TCP  91 aksaakskksqksaasalnlakes 114
                      ++++++++++++++    ++ k++
  Medtr8g033070.1 157 SPTKNPNQEPNQQSD--ESPEKKK 178
                      111111111111111..1111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-3279184IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14180134IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAKENSTNID LTLGEPKEEP EIEDVSAIKV MPMTMHVPPG IPMSMQVNKA LVQAQAQAQA  60
QTQAQAQAQA QQTIQKRSST KDRHTKVEGR GRRIRMPATC AARIFQLTRE LGHKSDGETI  120
RWLLEHAEPA IIAATGTGTV PAIAMSVNGT LKIPTTSPTK NPNQEPNQQS DESPEKKKRK  180
RPSNSAYVDI NDTTVSVSSG LITTSNINTN TNLNLIPQQP TIQLPQNMVP VWAIPSNAVV  240
PNGNTFFVVP TNQPQFFTLA RPITGFVSSM VTPVIQVQQA SCSLSPSTKS PARATVMAPS  300
TAATTTTQML RDFSLEIYDR QELQLLSRSS SKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181EKKKRKRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.256120.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g033070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444971.10.0transcription factor TCP9
SwissprotO646475e-80TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A072TP770.0A0A072TP77_MEDTR; Putative transcription factor TCP family
STRINGXP_004510891.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-71TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]