PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g032710.1

Common Name

MTR_8g032710

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

ARR-B

Protein Properties

Length: 477aa MW: 53180.3 Da PI: 5.1228

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g032710.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41.6	2.7e-13	221	272	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r Wt +LH++F+eave G++ A kti ++m+v+ t e LQ+YR Medtr8g032710.1 221 KRKSWTDDLHRKFLEAVEIA-GID-AGSKTIFQIMNVEEFTKESASNYLQRYRQ 272 6999***********988.998.999***********************6 PP
2	Response_reg	50.9	8.5e-18	23	132	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT.HHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge.eedalealk 91 vl+vd + + r ++ ++l + gy ev +a+ +++al +++ek+ ++l+l+ +++p+m+ +el++++ e++ +lp ++ta+++ + + +al Medtr8g032710.1 23 VLVVDANSACRTIVSKMLISLGY-EVMTASLASDALSIICEKKneVNLVLVEVQLPDMEIYELIEKMGESS-NLPSFIMTAYDDdTPSISRALG 114 89*******************.***********888888******************9877.9***9988799*** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Gak ++ Kp+++++l++ Medtr8g032710.1 115 FGAKWCFRKPVQISDLHD 132 *************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	1.4E-21	20	140	No hit	No description
SuperFamily	SSF52172	6.69E-21	20	139	IPR011006	CheY-like superfamily
SMART	SM00448	2.5E-6	21	134	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	27.056	22	138	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.3E-13	23	132	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	4.13E-16	24	137	No hit	No description
SuperFamily	SSF46689	5.2E-8	218	274	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-13	220	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-10	221	272	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MESDKSQSVT LRRYHGPVAG VKVLVVDANS ACRTIVSKML ISLGYEVMTA SLASDALSII 60 CEKKNEVNLV LVEVQLPDME IYELIEKMGE SSNLPSFIMT AYDDDTPSIS RALGFGAKWC 120 FRKPVQISDL HDLWRFAVWN RYETTVTEAV PDFVWRLSDV IMATKGLACQ PSMNTGERSR 180 QNAIGLEGQP SLNAGEKTLR SANGKEHEFP DNDNSVLLNR KRKSWTDDLH RKFLEAVEIA 240 GIDAGSKTIF QIMNVEEFTK ESASNYLQRY RQSMNLRATA MEQHVNGYVS RTNKSQGKCP 300 LEKQVLINDP KDLSNFVPVH ILDTSATFLP LESSSCQESP FSQNQLSLPL EQQGVAHTTS 360 SLGRFINRVN DDVSEKISQV FNTEDGEVSN AGQQLNFSTP LTFDMCEPLC TVLPMPPLPP 420 DEKAYYDKFF YAKGTQLFTD EDLKMWLSTI RGMNMPVMFH CACARAASTS NVNAVA*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MESDKSQSVT LRRYHGPVAG VKVLVVDANS ACRTIVSKML ISLGYEVMTA SLASDALSII  60
CEKKNEVNLV LVEVQLPDME IYELIEKMGE SSNLPSFIMT AYDDDTPSIS RALGFGAKWC  120
FRKPVQISDL HDLWRFAVWN RYETTVTEAV PDFVWRLSDV IMATKGLACQ PSMNTGERSR  180
QNAIGLEGQP SLNAGEKTLR SANGKEHEFP DNDNSVLLNR KRKSWTDDLH RKFLEAVEIA  240
GIDAGSKTIF QIMNVEEFTK ESASNYLQRY RQSMNLRATA MEQHVNGYVS RTNKSQGKCP  300
LEKQVLINDP KDLSNFVPVH ILDTSATFLP LESSSCQESP FSQNQLSLPL EQQGVAHTTS  360
SLGRFINRVN DDVSEKISQV FNTEDGEVSN AGQQLNFSTP LTFDMCEPLC TVLPMPPLPP  420
DEKAYYDKFF YAKGTQLFTD EDLKMWLSTI RGMNMPVMFH CACARAASTS NVNAVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g032710.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013444950.1	0.0	two-component response regulator ORR22 isoform X2
Refseq	XP_024627530.1	0.0	uncharacterized protein LOC25500959 isoform X1
Refseq	XP_024627531.1	0.0	uncharacterized protein LOC25500959 isoform X1
Refseq	XP_024627532.1	0.0	uncharacterized protein LOC25500959 isoform X1
Refseq	XP_024627533.1	0.0	two-component response regulator ORR22 isoform X2
TrEMBL	A0A072TZK7	0.0	A0A072TZK7_MEDTR; Putative response regulator and transcription factor RR-A-type family
STRING	XP_004510871.1	1e-167	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14362	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-23	response regulator 2

Link Out ? help Back to Top
Phytozome	Medtr8g032710.1
Entrez Gene	25500959

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]