PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g032610.1
Common NameMTR_8g032610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 306aa    MW: 33335.6 Da    PI: 7.3664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g032610.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-202676256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ GVr+++ +grWvAeI+d s   ++ r +lg+++t+eeAa+a+++a+++l+ge
  Medtr8g032610.1 26 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 76
                     578******.7*********42...35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-282683IPR001471AP2/ERF domain
PfamPF008475.5E-152676IPR001471AP2/ERF domain
SMARTSM003806.4E-342689IPR001471AP2/ERF domain
PROSITE profilePS5103220.3632683IPR001471AP2/ERF domain
CDDcd000189.59E-322683No hitNo description
PRINTSPR003673.1E-72738IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-202784IPR016177DNA-binding domain
PRINTSPR003673.1E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSGTEATKYA SATNNITKSK KPNMRRFIGV RQRPSGRWVA EIKDSSQHVR LWLGTYDTPE  60
EAARAYDEAA RALRGENART NFALAVSTDG TTPCSDDQGL VSSPQTNEAK NSLTFASLKA  120
KLSKNLQSIM ARTSDHNNNK FSKSRVSDHF TFASIFNRRN HNYNQISALD MKNIEKVVQP  180
SIIVPSNDGD PSRVSDCSSE WFGFQNLGLD SDGSDIGEIN NNANINVGDQ GFLEQLMGWI  240
DDDSSDICEG SSSKRFKVSS SVLVPPTFSS SPYDCGSPYS GYASPYNSCG SPCNGYASPY  300
YGSKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1526821471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g032610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444945.20.0ethylene-responsive transcription factor RAP2-2
TrEMBLA0A072TZK40.0A0A072TZK4_MEDTR; AP2 domain class transcription factor
STRINGXP_004510866.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-17related to AP2 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]