PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g028150.1
Common NameMTR_8g028150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 423aa    MW: 45175.7 Da    PI: 6.0304
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g028150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.62.1e-21278340163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK+ae eeL+++v++L+aeN aLk+e++el +++aklk e+
  Medtr8g028150.1 278 ERELKRERRKQSNRESARRSRLRKQAEAEELARRVDALTAENLALKSEMNELAENSAKLKIEN 340
                      89*********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.6E-301100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-22134259No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-15272337No hitNo description
PfamPF001703.5E-20278340IPR004827Basic-leucine zipper domain
SMARTSM003384.6E-17278342IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.852280343IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-10281337No hitNo description
CDDcd147022.19E-18283331No hitNo description
PROSITE patternPS000360285300IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGNSEDGKSI KTERPSSPVA TDQTDQANPS NMHVYPDWAA MQAYYGQRVN IPPYFNSAAA  60
PGHAPHPYMW GPPQPMMHPY GPPYAPPFYS HGGVYTHPAV AIGSNSNGQG ISSSPAAGTP  120
TSIETPTKSS GNTDQGLMKK LKGFDGLAMS IGNGNAESAE RGAENRLSRS VDTEGSSDGS  180
DGNTTGTNGT RKRSRDGTPT TTDGEGKTEM PDSQVSKETA ASKKTVSVIT SSAAENMVGP  240
VLSSGMTTSL ELRNPSPIST SAPQPCGVLP PEAWMQNERE LKRERRKQSN RESARRSRLR  300
KQAEAEELAR RVDALTAENL ALKSEMNELA ENSAKLKIEN ATLKEKLENT QLGQTEEIIL  360
NGMDKRATPV STENLLSRVN DSNSDDRAAE EENGFCENKP NSGAKLRQLL DTNPRANAVA  420
AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294300RRSRLRK
2294301RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.186140.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g028150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1374840.0BT137484.1 Medicago truncatula clone JCVI-FLMt-15O3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444711.10.0common plant regulatory factor 1
RefseqXP_024629677.10.0common plant regulatory factor 1
SwissprotQ990891e-131CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A072TNE80.0A0A072TNE8_MEDTR; BZIP transcription factor family protein
STRINGXP_004510714.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-96G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]