PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g027440.1
Common NameMTR_8g027440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 678aa    MW: 75735.6 Da    PI: 6.5976
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g027440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23131231198
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+lt sd++++g +++ +k+a+e+     + + + +++l  +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF   + ++
  Medtr8g027440.1 131 FCKILTASDTSTHGGFSVLRKHATEClppldMAPATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGEN 222
                      99****************************9555556679************************************************..4489 PP

                      E..EEEEE- CS
               B3  90 felvvkvfr 98 
                      ++l+v+v+r
  Medtr8g027440.1 223 GQLRVGVRR 231
                      999***998 PP
2Auxin_resp100.71.9e-33257337183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+ t+++F v+Y+Pr+  s+F+v ++k+++a++ +k+svGmRfkm+fe+eds+err+sGt+vgv d++   W+nS+WrsLk
  Medtr8g027440.1 257 ASHAVMTRTMFVVYYKPRT--SQFIVGLNKYLEAVNnHKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSA-GWSNSHWRSLK 337
                      689***************6..9*************989*******************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-39122246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-39123260IPR015300DNA-binding pseudobarrel domain
CDDcd100176.74E-20129231No hitNo description
SMARTSM010191.2E-21131233IPR003340B3 DNA binding domain
PfamPF023623.2E-21131231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66131233IPR003340B3 DNA binding domain
PfamPF065073.0E-31257337IPR010525Auxin response factor
SuperFamilySSF542778.34E-13553634No hitNo description
PfamPF023091.1E-10555641IPR033389AUX/IAA domain
PROSITE profilePS5174525.01558639IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAHLECNLRV PGGSSQQEKG VKNDDLYEEL WKLCAGPLVD VPNTGDRVFY FPQGHMEQLQ  60
ASTDQELNQE IPHFNLPSKI LCRVVNIQLL AEQETDEVYA CVALLPESDQ TEPVDPDPNP  120
SDSPKQKFHS FCKILTASDT STHGGFSVLR KHATECLPPL DMAPATPTQE LAAKDLHGFE  180
WKFKHIYRGQ PRRHLLTTGW STFVASKRLV AGDAFVFLRG ENGQLRVGVR RIAKQHSPMP  240
SSVISSQSMH LGVLATASHA VMTRTMFVVY YKPRTSQFIV GLNKYLEAVN NHKFSVGMRF  300
KMRFEGEDSP ERRFSGTIVG VGDVSAGWSN SHWRSLKVQW DEAATIPRPE RVSSWEIEPF  360
IASPTLNVAQ TSVKSKRSRP ADVSSCGFWY PGSSQAHEHT QLTGAAEFQG KESQIVSSRV  420
LVEGIWPNSP HLNVTSNPYA NTNIASRPSD GLTCDRVEDP KKNENPLDCW LFGVNLNNKN  480
KSCSVNSCLE KELGCPSLTI VTTSGPKESI ILTTNACETE KVQSPNYSLS NKGQQKKIIS  540
DASPNEWQNK LATVPSMRTR TKVQMEGVAV GRALDLTMLS GYDELIDEVE KLFDIKGELR  600
SQNKWRVTFT DNENDMMLVG DDPWPEFCNM VKKIFICSNE ELKKMKCKLP NSSLEIEETL  660
LSLDSQNRDE NQQTHVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-166143607355Auxin response factor 1
4ldw_A1e-166143607355Auxin response factor 1
4ldw_B1e-166143607355Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g027440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444604.10.0auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A072TM910.0A0A072TM91_MEDTR; Auxin response factor
STRINGXP_004510661.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]