PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g023990.1
Common NameMTR_8g023990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 518aa    MW: 59359.8 Da    PI: 6.988
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g023990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.22.2e-30172276199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+k+ tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  Medtr8g023990.1 172 FDKAVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElF 265
                      89***************************955567889*************************************************6546666 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l++ ++r+
  Medtr8g023990.1 266 RHRLFIDWRRR 276
                      67777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-41162279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-28168275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-24170259No hitNo description
PfamPF023621.1E-27172276IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944172277IPR003340B3 DNA binding domain
SMARTSM010194.5E-24172277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MELMQEVKDY SQEELEEDEE EIMTKTTREE EESSSKQQLQ HCTFSSPPSN FSLSSSSPST  60
THHHNHNHNH NHNHDVTNVS HQQNQWLGMN HHHHHSPESH NSAASKGGLG LLHQHQHQDA  120
TTSNFTNLKQ IDFMELSLGN NNNNKNKDVV INDPVPQEQE QQPSTHEKEH MFDKAVTPSD  180
VGKLNRLVIP KQHAEKYFPL DSTSNEKGLL LNFEDRNGKL WRFRYSYWNS SQSYVMTKGW  240
SRFVKEKKLD AGDIVSFQRG VGELFRHRLF IDWRRRSNHN HHTIDPSSAT LFTPFFLPNQ  300
QQYSIRWGGA NSRFYSLPYP TPQRLQHQQQ NHHDPLHNQM NFNHNMFPFH QYGGGNVNHQ  360
YNFHHHDPSS VFYMRSLAPS SMSMPQGSLS TRSQQQEGGG GSNVSNMIID SVPVSHYHHH  420
HGNLTSNATT STTTNGAAKR LRLFGVNMEC GGSSTSDDNL ASPSSIVPSL QHLKVPHHEE  480
TLSSSTSTRF EEDKRREEAS MIFGLDTSLQ YHNYQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-621672763113B3 domain-containing transcription factor NGA1
5os9_B6e-621672763113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g023990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6913901e-108EF691390.1 Trifolium repens clone CloverSSR-4_G01_002_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628015.10.0B3 domain-containing protein Os02g0683500 isoform X1
RefseqXP_024628016.10.0B3 domain-containing protein Os02g0683500 isoform X1
TrEMBLA0A072TYC00.0A0A072TYC0_MEDTR; B3 DNA-binding domain protein
STRINGAES850000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-71B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]