PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g023700.1
Common NameMTR_8g023700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 364aa    MW: 40223.5 Da    PI: 4.4654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g023700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-16117162352
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 
                      y+GVr +k +g+W+AeIrd + +   ++r++lg+f +aeeA +a++  +++
  Medtr8g023700.1 117 YPGVRMRK-WGKWAAEIRDpF-K---NARIWLGTFNSAEEASQAYESKKLQ 162
                      99****99.**********55.4...5******************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-20115156No hitNo description
SuperFamilySSF541712.29E-15116163IPR016177DNA-binding domain
PROSITE profilePS5103218.426116173IPR001471AP2/ERF domain
SMARTSM003807.7E-15116170IPR001471AP2/ERF domain
PRINTSPR003671.9E-8117128IPR001471AP2/ERF domain
PfamPF008478.3E-10117163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-20117164IPR001471AP2/ERF domain
PRINTSPR003671.9E-8139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSGSRKSRAR QRPNPLKQSK LITRKLQLVY DDPDATDLSE DESQQPRTTT KRSFVEVPLP  60
LHVPASVSLA SQNSFSLKQK TVTRRNTCLS AQPRTNKKVV PTTTSPTTGR RRSCAIYPGV  120
RMRKWGKWAA EIRDPFKNAR IWLGTFNSAE EASQAYESKK LQFELKSHAM EVETYIKKGS  180
ASAAPPVAAL NKNYSADAHA ANASVSEKFS TAEDSENLFS HTSPSSVLEL DTLTSNSIET  240
EAAAVTAVNE ASEMVSCQLE ELEIPDMSVL NLPEPITAEN PTGTDPNFGF GFDFDRFNID  300
DFGPDFDEFG DYGDLVDFMD IQIHGFDDNE PSELPDFDFG DIGDDDEFAG WIEESLQHNI  360
ACV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.250421e-102root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g023700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444500.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A072TY990.0A0A072TY99_MEDTR; Ethylene-responsive transcription factor ERF118-like protein
STRINGAES845721e-131(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-20ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]