PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g023680.1
Common NameMTR_8g023680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 366aa    MW: 40738.2 Da    PI: 4.443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g023680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17115161252
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
                      +y+GVr ++ +g+W+AeIrd +     r  r++lg++ +aeeA +a++  r+ 
  Medtr8g023680.1 115 KYRGVRMRP-WGKWAAEIRDpF-----RnVRIWLGTYNSAEEASQAYESKRLH 161
                      8********.**********66.....34******************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-21114155No hitNo description
SMARTSM003803.2E-17115169IPR001471AP2/ERF domain
PROSITE profilePS5103218.518115172IPR001471AP2/ERF domain
PfamPF008472.9E-10115160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-20115162IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-15115162IPR016177DNA-binding domain
PRINTSPR003671.1E-9116127IPR001471AP2/ERF domain
PRINTSPR003671.1E-9138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSGSRKSRAR QRPNPLKESK LMTRKLQLVF DDPDATDVSE DESQQSRTTT KRSFFEVTLP  60
PRAPAALSLT SQNSFYVKPK TVTRRKTCLS VQPQTNKKVV QTSTSPTTGR RSCAKYRGVR  120
MRPWGKWAAE IRDPFRNVRI WLGTYNSAEE ASQAYESKRL HFELKFQAME AIKKGSASAA  180
APRLAALNKN SYADVDAANA SVSEKFSTTE DSDSLFSHTS PSSVLELDTL ASSLIEKFDV  240
PSNTEVVAVY EPSDMVVCQL EELDIPDMSV LNLPEPTAAE IPIGTDPNLC SGFDFDRFNI  300
DDFGPDFDEF GDFDDLGDFK DIQIHGFDDN EPSELPDFDF GDIGVDDDEF AGWIEEPLQH  360
NIPCV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.250421e-167root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g023680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357960.0AC135796.25 Medicago truncatula chromosome 8 clone mth2-28b18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627490.20.0ethylene-responsive transcription factor ERF118
TrEMBLG7L9Z00.0G7L9Z0_MEDTR; Ethylene-responsive transcription factor ERF118-like protein
STRINGAES845721e-142(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.22e-23ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]