PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g022970.1
Common NameMTR_8g022970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21013.9 Da    PI: 9.8363
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g022970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.5e-1436711247
                     HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     tfskR+ g++ K  ELS+LC+a+ a+ii s++gkly
  Medtr8g022970.1 36 TFSKRKLGLFNKVTELSILCNAKTAMIITSPNGKLY 71
                     9**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.0821777IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-141776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-171888IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-121939IPR002100Transcription factor, MADS-box
PfamPF003198.8E-153671IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-123954IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-125475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASSNGNNTS TKSNNKRKRS TIKIKKAEQS NKPLDTFSKR KLGLFNKVTE LSILCNAKTA  60
MIITSPNGKL YVCGYPNPNT VIKHFLDREN PVIDADKRKQ DHEGVVETLR FQHEAIEERL  120
KEENNYLEGV KERNKSSSCF SCWWGHSIDD MALESLEQFK TSLVKLKLNL DASLQGKNIH  180
ITTQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g022970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1517280.0AC151728.19 Medicago truncatula clone mth2-48h10, complete sequence.
GenBankAC1835020.0AC183502.5 Medicago truncatula chromosome 8 clone mth2-75g17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627433.11e-136agamous-like MADS-box protein AGL29
TrEMBLG7L9551e-134G7L955_MEDTR; MADS-box transcription factor family protein
STRINGAET019091e-135(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-18AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]