PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g022820.3
Common NameMTR_8g022820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 382aa    MW: 42319.6 Da    PI: 4.5471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g022820.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19122171255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Medtr8g022820.3 122 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 171
                      69*******.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.96122179IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22122180IPR016177DNA-binding domain
SMARTSM003801.0E-36122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-32122181IPR001471AP2/ERF domain
CDDcd000189.40E-32122180No hitNo description
PRINTSPR003671.1E-11123134IPR001471AP2/ERF domain
PfamPF008474.1E-12123171IPR001471AP2/ERF domain
PRINTSPR003671.1E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MCGGAIISDF IPAAAAVGGS RRVTADILWP NLRRKPSSRK PFLLDDDFEA GFREFKDDSD  60
FDEDEDEDDD EGLLVGVKGF TFASNKNNKS SKSFVRSSAA KSVALNSNQQ AEKDSKRKRK  120
NQYRGIRQRP WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDAEARRIR GNKAKVNFPE  180
EAPVASSKRL KKNPEMQLLN DNLNSFKPNG NQMFNFSENM ENYYSPMDQV EQKPLVNNQY  240
ADIGAFSGNG VQLTSADVNA YFSSEHSSNS FDYSDLCWGE QGAKTPEISS VFSAAAPMEG  300
ESQKNMLSDN TQDMLPMQND SAKTLSEELA DIESQLKFFE NDNWSDASLA ALLSGDTTQD  360
GGNTMNLWNF DDLPSIAGGV F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-211211871380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.27430.0flower| leaf| pod| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g022820.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436480.0BT143648.1 Medicago truncatula clone JCVI-FLMt-19E24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627419.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLA0A072TLY00.0A0A072TLY0_MEDTR; Ethylene response factor
STRINGAET018950.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.35e-54related to AP2 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]