PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g022820.3 | ||||||||
Common Name | MTR_8g022820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 42319.6 Da PI: 4.5471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.6e-19 | 122 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Medtr8g022820.3 122 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 171 69*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.96 | 122 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 122 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-36 | 122 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 122 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.40E-32 | 122 | 180 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 123 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-12 | 123 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MCGGAIISDF IPAAAAVGGS RRVTADILWP NLRRKPSSRK PFLLDDDFEA GFREFKDDSD 60 FDEDEDEDDD EGLLVGVKGF TFASNKNNKS SKSFVRSSAA KSVALNSNQQ AEKDSKRKRK 120 NQYRGIRQRP WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDAEARRIR GNKAKVNFPE 180 EAPVASSKRL KKNPEMQLLN DNLNSFKPNG NQMFNFSENM ENYYSPMDQV EQKPLVNNQY 240 ADIGAFSGNG VQLTSADVNA YFSSEHSSNS FDYSDLCWGE QGAKTPEISS VFSAAAPMEG 300 ESQKNMLSDN TQDMLPMQND SAKTLSEELA DIESQLKFFE NDNWSDASLA ALLSGDTTQD 360 GGNTMNLWNF DDLPSIAGGV F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-21 | 121 | 187 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2743 | 0.0 | flower| leaf| pod| root| seed| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g022820.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143648 | 0.0 | BT143648.1 Medicago truncatula clone JCVI-FLMt-19E24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627419.1 | 0.0 | ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | A0A072TLY0 | 0.0 | A0A072TLY0_MEDTR; Ethylene response factor | ||||
STRING | AET01895 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 5e-54 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g022820.3 |
Entrez Gene | 11444630 |
Publications ? help Back to Top | |||
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