PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g022820.2
Common NameMTR_8g022820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 383aa    MW: 42376.6 Da    PI: 4.5471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g022820.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19123172255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Medtr8g022820.2 123 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 172
                      69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-31123181No hitNo description
Gene3DG3DSA:3.30.730.103.7E-32123182IPR001471AP2/ERF domain
PROSITE profilePS5103223.96123180IPR001471AP2/ERF domain
SMARTSM003801.0E-36123186IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22123181IPR016177DNA-binding domain
PRINTSPR003671.1E-11124135IPR001471AP2/ERF domain
PfamPF008474.1E-12124172IPR001471AP2/ERF domain
PRINTSPR003671.1E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MCGGAIISDF IPAAAAVGGS RRVTADILWP NLRRKPSSRK PFLLDDDFEA GFREFKDDSD  60
FDEDEDEDDD EGLLVGVKGF TFASNKNNKS SKSFVRGSSA AKSVALNSNQ QAEKDSKRKR  120
KNQYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDAEARRI RGNKAKVNFP  180
EEAPVASSKR LKKNPEMQLL NDNLNSFKPN GNQMFNFSEN MENYYSPMDQ VEQKPLVNNQ  240
YADIGAFSGN GVQLTSADVN AYFSSEHSSN SFDYSDLCWG EQGAKTPEIS SVFSAAAPME  300
GESQKNMLSD NTQDMLPMQN DSAKTLSEEL ADIESQLKFF ENDNWSDASL AALLSGDTTQ  360
DGGNTMNLWN FDDLPSIAGG VF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-211221881380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.27430.0flower| leaf| pod| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g022820.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436480.0BT143648.1 Medicago truncatula clone JCVI-FLMt-19E24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627419.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLG7L9410.0G7L941_MEDTR; Ethylene response factor
STRINGAET018950.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.38e-57related to AP2 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]