PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g022820.1 | ||||||||
Common Name | MTR_8g022820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 42376.6 Da PI: 4.5471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.6e-19 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Medtr8g022820.1 123 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 172 69*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.00E-31 | 123 | 181 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 123 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.96 | 123 | 180 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 123 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 123 | 181 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-12 | 124 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MCGGAIISDF IPAAAAVGGS RRVTADILWP NLRRKPSSRK PFLLDDDFEA GFREFKDDSD 60 FDEDEDEDDD EGLLVGVKGF TFASNKNNKS SKSFVRGSSA AKSVALNSNQ QAEKDSKRKR 120 KNQYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDAEARRI RGNKAKVNFP 180 EEAPVASSKR LKKNPEMQLL NDNLNSFKPN GNQMFNFSEN MENYYSPMDQ VEQKPLVNNQ 240 YADIGAFSGN GVQLTSADVN AYFSSEHSSN SFDYSDLCWG EQGAKTPEIS SVFSAAAPME 300 GESQKNMLSD NTQDMLPMQN DSAKTLSEEL ADIESQLKFF ENDNWSDASL AALLSGDTTQ 360 DGGNTMNLWN FDDLPSIAGG VF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-21 | 122 | 188 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2743 | 0.0 | flower| leaf| pod| root| seed| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g022820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143648 | 0.0 | BT143648.1 Medicago truncatula clone JCVI-FLMt-19E24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627419.1 | 0.0 | ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | G7L941 | 0.0 | G7L941_MEDTR; Ethylene response factor | ||||
STRING | AET01895 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 8e-57 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g022820.1 |
Entrez Gene | 11444630 |
Publications ? help Back to Top | |||
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