PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g020560.1
Common NameMTR_8g020560
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRF
Protein Properties Length: 349aa    MW: 39878.6 Da    PI: 8.0795
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g020560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66e-2576119144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Medtr8g020560.1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 119
                      79***************************************986 PP
2QLQ52.31.7e-181045136
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     s FT++Q+q+L++Q+l++Ky++ + P+Pp+L+  i+
  Medtr8g020560.1 10 SLFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIK 45
                     68*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.8E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.4721146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-131244IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.06476120IPR014977WRC domain
PfamPF088793.2E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMSASSRNRS LFTPNQWQEL EQQALVFKYM VTGTPIPPDL IYSIKRSLDT SISSRIFPHP  60
PIGWGCFEMG FGRKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEL  120
VVSSSTTTPT NNTNTASSYS NRNISLNNNS SSINSPSSFP FSTSSMACHD QSQSFSQSYQ  180
NSSLNPYYYS QSITSTNPLD HSHFQTQDAT THHLFLDSTS YSQDDKDFRR QVQGIRDGTV  240
DERTFFPEAT GSSRSCYHDS YQQQLSMNPF KSYSSSQFQN INDDNSRQQQ EQHCFVLGTD  300
IKSTRTTNKD KESETTQKPL HHFFGEWTPK NTDSWLDLAS NSRIPTDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g020560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1446450.0AC144645.17 Medicago truncatula chromosome 8 clone mth2-11e15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627270.20.0growth-regulating factor 5
TrEMBLG7L6U20.0G7L6U2_MEDTR; Growth-regulating factor-like protein
STRINGXP_004510465.11e-168(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-62growth-regulating factor 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]