PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g020330.8
Common NameMTR_8g020330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 664aa    MW: 73435.1 Da    PI: 8.082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g020330.8genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-09545593348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v + G+g+W+ I r       +Rt  ++k++w+++l
  Medtr8g020330.8 545 AWTLVEVLKLVDGVSRCGPGRWSEIKRLSFssySHRTSVDLKDKWRNLL 593
                      7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.46538597IPR017930Myb domain
SuperFamilySSF466892.42E-15540600IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-12540596IPR009057Homeodomain-like
SMARTSM007171.4E-8542595IPR001005SANT/Myb domain
CDDcd116606.34E-19544594No hitNo description
PfamPF002494.6E-6545593IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
METVVEIEDY DDGKLGDSGI DRSSHALSSP KRISNPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLEYENS EMRVVADTGQ SMECISIERS SSGKLRLECS EGVSQLGTAE ADLGKLNAKF  120
QMLQKVKQEE KLRLSSRSPV HSHVQIDSQC SADKFPVRNE KVLSETPFQE AHSIASSLNY  180
SLSNQSGSID QCSRPSGGVI ESGSSASAVN SALKHDFSMT DGEICLDKLS IKELHELFKV  240
TFGRETTVKD KQWLRRRIAM SLTNSCDVSA TTFTVKDNKI TRKCEEECSR NVNAAAVISV  300
ENMAVQRDIK YNDSNAVGGC EVDNNQVASE TRLENLNIEH ELEDEDQLRE QRAAKRMRKP  360
TKRYIEELSE NESREQIPRS SSSNKSTGHM QASPTSYAGP ARNAYPETRT FTTRLDSLGG  420
SGFQIPCVTR VRRSRPRKNI TSLMKFHPTG TGEAAKLGNK VVSNHGSDAD SEIEDKFIKP  480
SSMHVKVHQT STSESTKEKK QYPVMIGTTD PRQELRPKKI DSSSHATEGN IPTAKGGMRR  540
KHHRAWTLVE VLKLVDGVSR CGPGRWSEIK RLSFSSYSHR TSVDLKDKWR NLLKASFAPT  600
SADEGMNSRK HGSAPIPEPI LVRVRELAEI NSQVPSNSSS SKFTANGATN GARSMHGDRV  660
GYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431437RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.108150.0glandular trichome| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g020330.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627253.20.0uncharacterized protein LOC11429459 isoform X2
TrEMBLG7L6S40.0G7L6S4_MEDTR; Myb transcription factor
STRINGAET017290.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-113TRF-like 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]