PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g020330.4
Common NameMTR_8g020330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 668aa    MW: 73968.7 Da    PI: 7.9305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g020330.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-09549597348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v + G+g+W+ I r       +Rt  ++k++w+++l
  Medtr8g020330.4 549 AWTLVEVLKLVDGVSRCGPGRWSEIKRLSFssySHRTSVDLKDKWRNLL 597
                      7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.46542601IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-12544600IPR009057Homeodomain-like
SuperFamilySSF466892.42E-15544604IPR009057Homeodomain-like
SMARTSM007171.4E-8546599IPR001005SANT/Myb domain
CDDcd116606.24E-19548598No hitNo description
PfamPF002494.6E-6549597IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
METVVEIEDY DDGKLGDSGI DRSSHALSSP KRISNPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLEYENS EMRVVADTGQ SMECISIERS SSGKLRLECS EGVSQLGTAE ADLGKLNAKF  120
QYIEQMLQKV KQEEKLRLSS RSPVHSHVQI DSQCSADKFP VRNEKVLSET PFQEAHSIAS  180
SLNYSLSNQS GSIDQCSRPS GGVIESGSSA SAVNSALKHD FSMTDGEICL DKLSIKELHE  240
LFKVTFGRET TVKDKQWLRR RIAMSLTNSC DVSATTFTVK DNKITRKCEE ECSRNVNAAA  300
VISVENMAVQ RDIKYNDSNA VGGCEVDNNQ VASETRLENL NIEHELEDED QLREQRAAKR  360
MRKPTKRYIE ELSENESREQ IPRSSSSNKS TGHMQASPTS YAGPARNAYP ETRTFTTRLD  420
SLGGSGFQIP CVTRVRRSRP RKNITSLMKF HPTGTGEAAK LGNKVVSNHG SDADSEIEDK  480
FIKPSSMHVK VHQTSTSEST KEKKQYPVMI GTTDPRQELR PKKIDSSSHA TEGNIPTAKG  540
GMRRKHHRAW TLVEVLKLVD GVSRCGPGRW SEIKRLSFSS YSHRTSVDLK DKWRNLLKAS  600
FAPTSADEGM NSRKHGSAPI PEPILVRVRE LAEINSQVPS NSSSSKFTAN GATNGARSMH  660
GDRVGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435441RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.108150.0glandular trichome| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g020330.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444440.10.0uncharacterized protein LOC11429459 isoform X1
TrEMBLA0A072TY480.0A0A072TY48_MEDTR; Myb transcription factor
STRINGAET017290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-115TRF-like 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]