PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g017540.1
Common NameMTR_8g017540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 395aa    MW: 45178 Da    PI: 6.5423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g017540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-1860107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Medtr8g017540.1  60 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 107
                      788*******************************************97 PP
2Myb_DNA-binding47.34.6e-15113156146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E  l+v++++ lG++ W+ Ia++++ gRt++++k++w++
  Medtr8g017540.1 113 RGSFSHQEVALIVELHNILGNR-WAQIAKHLP-GRTDNEVKNFWNS 156
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-2752110IPR009057Homeodomain-like
PROSITE profilePS5129418.8155107IPR017930Myb domain
SuperFamilySSF466891.01E-2857154IPR009057Homeodomain-like
SMARTSM007178.3E-1459109IPR001005SANT/Myb domain
PfamPF002497.8E-1660107IPR001005SANT/Myb domain
CDDcd001675.52E-1263107No hitNo description
PROSITE profilePS5129425.084108162IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-24111162IPR009057Homeodomain-like
SMARTSM007172.5E-15112160IPR001005SANT/Myb domain
PfamPF002491.3E-13113156IPR001005SANT/Myb domain
CDDcd001671.25E-10115155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGTKGDIEKF IRSNDFGLWK LKPKIEDRDS SVISFTIFQI IPKQDIMGHH SCCNKQKVKR  60
GLWSPEEDEK LIKYITTYGH GCWSSVPKLA GLQRCGKSCR LRWINYLRPD LKRGSFSHQE  120
VALIVELHNI LGNRWAQIAK HLPGRTDNEV KNFWNSTIKK KILCHDIIPS FTTFSEIHTP  180
YHNIGSMENS FPLNANPNVI LNFNHYNHQD YLYHSTSSPN LQGNFHQIDT KVDINDHYNA  240
NFPHIQNPIP QNIVQPISDP FPYEDGVALH LNPVNQYSKS DTTPLNKLMN PIELMQQYDQ  300
YHDLVELDAT MPELVNHQSL EDYACNILDS SNSQEHEAPA KIQCYTYGLI HPQDQNVEAN  360
PLDYNIDALM CMSSLSSSSS HIVTNPIIPL GWES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31601627108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g017540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369558e-66AC136955.20 Medicago truncatula clone mth2-10p1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628590.10.0transcription factor MYB26
TrEMBLA0A072TNL50.0A0A072TNL5_MEDTR; Myb-like DNA-binding domain protein
STRINGXP_004510395.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-76myb domain protein 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]