PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g017440.1
Common NameMTR_8g017440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 342aa    MW: 38898.1 Da    PI: 6.9469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g017440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Medtr8g017440.1 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding46.96.3e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E  l+++++  lG++ W+ Ia++++ gRt++++k++w++ 
  Medtr8g017440.1  67 RGSFSHQEAALILELHSILGNR-WAQIAKHLP-GRTDNEVKNFWNST 111
                      899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.81961IPR017930Myb domain
SuperFamilySSF466894.12E-2911108IPR009057Homeodomain-like
SMARTSM007178.3E-141363IPR001005SANT/Myb domain
PfamPF002496.3E-161461IPR001005SANT/Myb domain
CDDcd001675.76E-121761No hitNo description
PROSITE profilePS5129425.43362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2465116IPR009057Homeodomain-like
SMARTSM007175.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1367110IPR001005SANT/Myb domain
CDDcd001674.26E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SHQEAALILE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS TMKKKIPSHG  120
IFPSFPTFSN IHTPYNKNIG SMESLLPINA NPNVILNFNH HHEDQLCYPT SSPNLQGNFH  180
QIDTKVDMIN NHYNGNFLHI QNPIPEILQP MSNPSPYEDT WSLGCLPLHL NQNQENQISK  240
SDTTPLNKII NPIELMEQYV QCHDLVELEA TLPKLVNDQS LEDYAAAKIQ SYTTSITYPQ  300
DQNMEDNQLI YINDALIFMS SVSSSSSQVV KNPTIPLGWE P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g017440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444365.10.0transcription factor MYB26
TrEMBLA0A072TLY20.0A0A072TLY2_MEDTR; Myb-like DNA-binding domain protein
STRINGXP_004510395.11e-139(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.25e-77myb domain protein 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]