PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g017390.1
Common NameMTR_8g017390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 476aa    MW: 54691.1 Da    PI: 5.4586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g017390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G + +W+++++  g+ R++k+c++rw +yl
  Medtr8g017390.1 14 RGLWSPEEDEKLIKYITTYGQDcCWSSVPKLAGLQRCGKSCRLRWINYL 62
                     788********************************************97 PP
2Myb_DNA-binding46.67.7e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E  l+v++++ lG++ W+ Ia++++ gRt++++k++w++
  Medtr8g017390.1  68 RGSFSHQEVALIVELHNILGNR-WAQIAKHLP-GRTDNEVKNFWNS 111
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23665IPR009057Homeodomain-like
PROSITE profilePS5129416.487962IPR017930Myb domain
SuperFamilySSF466891.2E-2512109IPR009057Homeodomain-like
SMARTSM007176.3E-121364IPR001005SANT/Myb domain
PfamPF002491.0E-141462IPR001005SANT/Myb domain
CDDcd001674.53E-101762No hitNo description
PROSITE profilePS5129424.4463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2466118IPR009057Homeodomain-like
SMARTSM007174.9E-1567115IPR001005SANT/Myb domain
PfamPF002492.1E-1368111IPR001005SANT/Myb domain
CDDcd001671.19E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGHHSCCNKE KVNRGLWSPE EDEKLIKYIT TYGQDCCWSS VPKLAGLQRC GKSCRLRWIN  60
YLRPDLKRGS FSHQEVALIV ELHNILGNRW AQIAKHLPGR TDNEVKNFWN SSMKKKLISY  120
DNVPSFTPFY DIHIPYNTGS KKSFFPLNAN PNVILNFNPY HQDLLYLSNS FPNLQCFQQP  180
DTKVDINNNF NAKFPPNQNP IIPEIVLPSN PSSCEDTWSL DCVALDLNPS QLENQISKSG  240
TSINQSSLMQ QYDQYHDDHN LVKLEALVPK LVNDQSLEDY ACSILDYSSD SKEHVILNSY  300
HHHHQDQFYL PTSSLNLQGN FYQIDTKVDM INNHYNPNFL DIENQIPSNP FPDEDPWSLD  360
CVALHINRIK ENPSDTSQHH NLVNPIVLMP QQYDQCHDHH LVEMEPIIVP KLVNDQSLEE  420
HDCCILDSSD SKKHEALSII YPQDQNMEVD QLDNYTDALR LSLPSSSSQT VNYKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g017390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444359.10.0transcription factor MYB87
TrEMBLA0A072TMI80.0A0A072TMI8_MEDTR; Myb-like DNA-binding domain protein
STRINGXP_004510395.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-71myb domain protein 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]