PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g017350.1
Common NameMTR_8g017350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 644aa    MW: 73667.1 Da    PI: 4.5834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g017350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G + +W+++++  g+ R++k+c++rw +yl
  Medtr8g017350.1 14 RGLWSPEEDEKLIKYITTYGQDcCWSSVPKLAGLQRCGKSCRLRWINYL 62
                     788********************************************97 PP
2Myb_DNA-binding40.85.1e-1368110145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++ eE  ++++++  lG++ W+ I ++++ gRt++++k++w+
  Medtr8g017350.1  68 RGSFSYEEVAIIIELHSILGNR-WAQITKHLP-GRTDNEVKNFWN 110
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23665IPR009057Homeodomain-like
PROSITE profilePS5129416.487962IPR017930Myb domain
SuperFamilySSF466892.7E-2512109IPR009057Homeodomain-like
SMARTSM007176.3E-121364IPR001005SANT/Myb domain
PfamPF002491.5E-141462IPR001005SANT/Myb domain
CDDcd001677.56E-101762No hitNo description
PROSITE profilePS5129423.12663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2366117IPR009057Homeodomain-like
SMARTSM007171.3E-1267115IPR001005SANT/Myb domain
PfamPF002491.4E-1168111IPR001005SANT/Myb domain
CDDcd001678.49E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAHHSCCSKE KVNRGLWSPE EDEKLIKYIT TYGQDCCWSS VPKLAGLQRC GKSCRLRWIN  60
YLRPDLKRGS FSYEEVAIII ELHSILGNRW AQITKHLPGR TDNEVKNFWN SSIKKKLLSD  120
DIVPSFTPFY DDIHLSYSDG FKETFFPLNA NPNVMLNFNP HHQDHLYLSN SSPNMQCFHQ  180
TGTMVDINNH FNARFLPNQN PIIPEIVLPS NPSSCEDTWS LDCVALDLNP SQLENQISKN  240
GTTPFNIGDT SINQSSLMQQ YDQYHDHNLV EHEAIVPKLL NDQSLENYAC SILDYSSDSK  300
EQMILNSNHH HQDQFYLPTS SPNLQGNFYQ IDTNVDMINN HYNPNFLDIE NQIPSNPFPD  360
EDTWSLECVA LHINRNKENP SDTTQHHNLV NPIASMAQQY DQCHDHHLVE TEPNILPQLV  420
NDQSLEDHDC CILDSFDSKE HEALSIIYPQ GQNMEANQLD NYIDALRLSL PSSSSQTVNY  480
NTNPKGXMIN NHYNPNFLDI ENQIPSNPFP DEDTWSLECV ALHINRNKEN PSDTTQHHNL  540
VNPIASMAQQ YDQCHDHHLV ETEPNILPQL VNDQSLEDHD CCILDSFDSK EHEALSIIYP  600
QGQNMETNQL DNYIDALRLS LPSSSSQTVN YNTNPSIPLG WQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g017350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444355.10.0transcription factor MYB41
TrEMBLA0A072TNK40.0A0A072TNK4_MEDTR; Myb-like DNA-binding domain protein
STRINGXP_004510395.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.24e-69myb domain protein 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]