PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g017090.1 | ||||||||
Common Name | MTR_8g017090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 304aa MW: 34385.1 Da PI: 4.9904 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.5e-39 | 12 | 112 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn+ k++k l++ +++am+++++++++ra+dPv G+++ i++lq q+e k el Medtr8g017090.1 12 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNINKIIKFLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQAQIEYYKLEL 105 7********************************************************************************************* PP DUF260 95 allkeel 101 +l++++l Medtr8g017090.1 106 DLVHQQL 112 ***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.33 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-36 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNNKNNNNTT QACAACKYQR RKCAPDCILA PYFPHDRQRQ FLNAHKLFGV SNINKIIKFL 60 DPPLKDQAMR TIIFQSDMRA NDPVGGCYKY IQDLQAQIEY YKLELDLVHQ QLAIFRSQSQ 120 QQQQQIQVNY GDQGIMNSDP LLGFYNPSGS IVPGTVPAHY HYNVQEQVVP QLQEHGQEQE 180 QEQYIITEER NSSSVNTTPL QQHNNNWGAI SLSSLSLHGQ SSNASDEYDH KPILDIPCDE 240 RNELGFDSGE ILHHSDEAVL FKIDDGLIKS DGDYIQQTQV QAQDQDHDLK GAATLFTLTN 300 CTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-26 | 13 | 112 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-26 | 13 | 112 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g017090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140915 | 0.0 | AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627098.1 | 0.0 | LOB domain-containing protein 22 | ||||
TrEMBL | G7LHF8 | 0.0 | G7LHF8_MEDTR; LOB domain protein | ||||
STRING | AET01574 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-50 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g017090.1 |
Entrez Gene | 11418906 |
Publications ? help Back to Top | |||
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