PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g015840.1 | ||||||||
Common Name | MTR_138s0038, MTR_8g015840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 219aa MW: 23811.1 Da PI: 8.0391 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.3 | 1.9e-39 | 16 | 76 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+C+ryWtkGGalrn+PvGgg+rk k+s Medtr8g015840.1 16 EQEQLKCPRCESNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGTRKVTKRS 76 57899***************************************************88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-26 | 11 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.6E-33 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.761 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MQDQTTFQPM KPNFPEQEQL KCPRCESNNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGAL 60 RNIPVGGGTR KVTKRSSNSK RSTTPSSSSP SASTTSSSAA KVSASVSETD PTQIHVDPAE 120 RNFSGGSFSS LLASTERFGN LFEGLNSNGS GLKMVEMGEF GENLNCDPVV NTDLGQNQGG 180 RNGESEIFLG LQNGGSNCWN DNHGWSDLAI YTPSSTYQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g015840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT967318 | 3e-73 | CT967318.5 M.truncatula DNA sequence from clone MTH2-3P14 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024627596.1 | 1e-162 | dof zinc finger protein DOF1.7 | ||||
Swissprot | O82155 | 1e-45 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | G8A2U0 | 1e-160 | G8A2U0_MEDTR; Dof domain zinc finger protein | ||||
STRING | AES85778 | 1e-161 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6181 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-36 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g015840.1 |
Entrez Gene | 25500412 |
Publications ? help Back to Top | |||
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