PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g015450.4
Common NameMTR_8g015450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 431aa    MW: 48029.4 Da    PI: 7.028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g015450.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-07343383954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++++P        K++ a++L +A +Y+k L
  Medtr8g015450.4 343 ARHRRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 383
                      599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.31334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11340392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13340393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4344383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-4356388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDGLNWDGSQ FQENTPILWS TQHFEEGYNI SNSLTHQIQE MHKVQIGNTY SNSERLIPNT  60
NLSQHATNMK VKSKAGSSWR KEPLIPQSFQ SLSDSRPYNI MPDFNMAHQQ QKLNNSFESF  120
DCLLSGTNSN TDTSVENDND GISKLFSDCK NLWNFSYVSN TATSSGETDS NVSNSTSYEA  180
LTQTQMRTPD TSSIKSVSAT EGTGNKNIQC PLNEFDETIS QSSSDQYIHP RKAIQSSTIH  240
NSSPVEGGFR LITDKPPKCK KPRCDKGPCS TNINFQQPNS SSMCCSSSIE EADPEAIAQM  300
KEMMYRAAAF RPVNFGMDDI DVIEKKPKRK NVKISNDPQT VAARHRRERI SERIRVLQKI  360
VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENLGNKVNAM DCNPTSIAFS FNPSFPMQMI  420
PSNHNPHSQG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g015450.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444240.10.0transcription factor bHLH87
RefseqXP_024627691.10.0transcription factor bHLH87
TrEMBLA0A072TLG80.0A0A072TLG8_MEDTR; Putative transcription factor bHLH family
STRINGXP_004510332.11e-169(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-59bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]