PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g015450.1 | ||||||||
Common Name | MTR_8g015450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 431aa MW: 48029.4 Da PI: 7.028 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22 | 2.9e-07 | 343 | 383 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P K++ a++L +A +Y+k L Medtr8g015450.1 343 ARHRRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 383 599*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.31 | 334 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-11 | 340 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-12 | 340 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-13 | 340 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-4 | 344 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.67E-4 | 356 | 388 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MDGLNWDGSQ FQENTPILWS TQHFEEGYNI SNSLTHQIQE MHKVQIGNTY SNSERLIPNT 60 NLSQHATNMK VKSKAGSSWR KEPLIPQSFQ SLSDSRPYNI MPDFNMAHQQ QKLNNSFESF 120 DCLLSGTNSN TDTSVENDND GISKLFSDCK NLWNFSYVSN TATSSGETDS NVSNSTSYEA 180 LTQTQMRTPD TSSIKSVSAT EGTGNKNIQC PLNEFDETIS QSSSDQYIHP RKAIQSSTIH 240 NSSPVEGGFR LITDKPPKCK KPRCDKGPCS TNINFQQPNS SSMCCSSSIE EADPEAIAQM 300 KEMMYRAAAF RPVNFGMDDI DVIEKKPKRK NVKISNDPQT VAARHRRERI SERIRVLQKI 360 VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENLGNKVNAM DCNPTSIAFS FNPSFPMQMI 420 PSNHNPHSQG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g015450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013444240.1 | 0.0 | transcription factor bHLH87 | ||||
Refseq | XP_024627691.1 | 0.0 | transcription factor bHLH87 | ||||
TrEMBL | A0A072TLG8 | 0.0 | A0A072TLG8_MEDTR; Putative transcription factor bHLH family | ||||
STRING | XP_004510332.1 | 1e-169 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4530 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 5e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g015450.1 |
Entrez Gene | 25500381 |
Publications ? help Back to Top | |||
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