PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g013860.1
Common NameMTR_8g013860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 205aa    MW: 22902.4 Da    PI: 5.2969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g013860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-184695255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Medtr8g013860.1 46 TYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 95
                     69****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.81346103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3146104IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2146104IPR016177DNA-binding domain
SMARTSM003802.3E-3546109IPR001471AP2/ERF domain
PfamPF008475.5E-124695IPR001471AP2/ERF domain
CDDcd000182.80E-3147105No hitNo description
PRINTSPR003677.0E-104758IPR001471AP2/ERF domain
PRINTSPR003677.0E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTQSTTTSST SSQESPPTHS IQKQSPTRPK RPRDDDNNDN NNKHPTYHGV RKRNWGKWVS  60
EIREPRKKSR IWLGTFSTPE MAARAHDVAA LTIKGKTAIL NFPHLSNMLP RPATSAPRDI  120
QAAATAAAAM VDFDDPVMHV TSCSESESVE ELSQIVELPK INEEDEDDSV DSTWVYHHPS  180
PLIGFEGIEF YATFSDDFLL PLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2134108277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g013860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1660460.0AC166046.15 Medicago truncatula chromosome 8 clone mth2-6p7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626994.11e-151ethylene-responsive transcription factor ERF036
SwissprotQ9LYD31e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLG7LFX41e-150G7LFX4_MEDTR; AP2 domain class transcription factor
STRINGAET014701e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]