PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g012290.2
Common NameMTR_8g012290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 499aa    MW: 55303.3 Da    PI: 6.2054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g012290.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09301348455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Medtr8g012290.2 301 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 348
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.64E-10295352No hitNo description
SuperFamilySSF474596.54E-17295366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-17297365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6301348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MENQFFLNAG FEPYQTQDCF FNPNWDKSTD QNLNYDSTLS SIVSSPAATS SPSNPNMSNE  60
NFVMRELIGK LGTFGEISQH SSNPLVLPMM SRVAEFSPDP GFVQRAAKFS CFGSKSFNER  120
GNQMVMNNVE LAQRSHNLME NGMKLSRVSS SPSLKTFGSQ MVNHENKNSS LQQENEKMEV  180
ANSQEESKIS EQNTPNGEIG VKASPDMNSR KRKASSSKGK APNSTNPTKG VEGSGEDFNA  240
KKIKANEGER NENGVRNMEE EIKEGTPNAG EEKQNKSDSK PPEPQKDYIH VRARRGQATD  300
SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS  360
VNTKMDLSIE SLVVSKDIFQ SNNSLQNSIF QLDSSVPSFY GQQPQQNQAI HNNIPNTNGS  420
HCSVEPLDSS LCHNIGMHLP FLNGFNEGGS QQYPLTFSEE DLNTVVQMGF GQTSNRNTPI  480
HSPSFNGSNQ STQMKIEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.125560.0flower| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g012290.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1712660.0AC171266.26 Medicago truncatula clone mth2-14o4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444086.10.0transcription factor bHLH62 isoform X1
TrEMBLA0A072TMN30.0A0A072TMN3_MEDTR; BHLH transcription factor
STRINGAET014140.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-89bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]