PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g012290.1 | ||||||||
Common Name | MTR_8g012290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 498aa MW: 55175.2 Da PI: 6.2054 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.2e-09 | 301 | 348 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Medtr8g012290.1 301 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 348 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.35E-10 | 295 | 352 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-17 | 295 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 297 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-17 | 297 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 301 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 303 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MENQFFLNAG FEPYQTQDCF FNPNWDKSTD QNLNYDSTLS SIVSSPAATS SPSNPNMSNE 60 NFVMRELIGK LGTFGEISQH SSNPLVLPMM SRVAEFSPDP GFVQRAAKFS CFGSKSFNER 120 GNQMVMNNVE LAQRSHNLME NGMKLSRVSS SPSLKTFGSQ MVNHENKNSS LQQENEKMEV 180 ANSQEESKIS EQNTPNGEIG VKASPDMNSR KRKASSSKGK APNSTNPTKG VEGSGEDFNA 240 KKIKANEGER NENGVRNMEE EIKEGTPNAG EEKQNKSDSK PPEPQKDYIH VRARRGQATD 300 SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS 360 VNTKMDLSIE SLVVSKDIFQ SNNSLQNSIF QLDSSVPSFY GQQPQQNQAI HNNIPNTNGS 420 HCSVEPLDSS LCHNIGMHLP FLNGFNEGGS QYPLTFSEED LNTVVQMGFG QTSNRNTPIH 480 SPSFNGSNQS TQMKIEL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12556 | 0.0 | flower| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g012290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC171266 | 0.0 | AC171266.26 Medicago truncatula clone mth2-14o4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626938.2 | 0.0 | transcription factor bHLH62 isoform X2 | ||||
TrEMBL | G7LF56 | 0.0 | G7LF56_MEDTR; BHLH transcription factor | ||||
STRING | AET01414 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-90 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g012290.1 |
Entrez Gene | 11419890 |
Publications ? help Back to Top | |||
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