PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g010340.1
Common NameMTR_8g010340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 289aa    MW: 33398.9 Da    PI: 4.5664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g010340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-16106155255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +gr++AeIrdp     r  +r +lg+++taeeAa  +++a+   +g
  Medtr8g010340.1 106 KFRGVRRRR-WGRFAAEIRDP-----RlgRRRWLGTYDTAEEAALVYDRAAIDCRG 155
                      89****777.**********9.....556*********************987766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.679106163IPR001471AP2/ERF domain
SMARTSM003801.0E-30106169IPR001471AP2/ERF domain
PfamPF008478.0E-10106155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-24106161IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18106162IPR016177DNA-binding domain
PRINTSPR003679.2E-8107118IPR001471AP2/ERF domain
CDDcd000189.39E-21118161No hitNo description
PRINTSPR003679.2E-8129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEKIIEHKS VTTKLVKSSF MSSLPKSVTI SFTDNYATDS STEDEEQHVI TTRKIVNEVR  60
FQQCSTLSNK NNKKRQEETK NKNAVVVCLE QNNENPRQIN DVVHQKFRGV RRRRWGRFAA  120
EIRDPRLGRR RWLGTYDTAE EAALVYDRAA IDCRGADAVT NIIKPPQKKR SVKDEFVCDR  180
NGYFGDNVSV EDCNGSSSYS QESVSEIWSE RMNDQEWIKE ITGEEYLDDG FTFVDESYGS  240
CSYYEPVLPT MVSNESDCIV DTIPFHLEED FESCEWEVNN YFNESLEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-18105161158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g010340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466130.0BT146613.1 Medicago truncatula clone JCVI-FLMt-14H5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444027.10.0ethylene-responsive transcription factor CRF6
TrEMBLA0A396GF320.0A0A396GF32_MEDTR; Putative transcription factor AP2-EREBP family
STRINGXP_004510277.16e-64(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-21cytokinin response factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]