PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g010340.1 | ||||||||
Common Name | MTR_8g010340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 33398.9 Da PI: 4.5664 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.3e-16 | 106 | 155 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +gr++AeIrdp r +r +lg+++taeeAa +++a+ +g Medtr8g010340.1 106 KFRGVRRRR-WGRFAAEIRDP-----RlgRRRWLGTYDTAEEAALVYDRAAIDCRG 155 89****777.**********9.....556*********************987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.679 | 106 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-30 | 106 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-10 | 106 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-24 | 106 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-18 | 106 | 162 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.2E-8 | 107 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.39E-21 | 118 | 161 | No hit | No description |
PRINTS | PR00367 | 9.2E-8 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEEKIIEHKS VTTKLVKSSF MSSLPKSVTI SFTDNYATDS STEDEEQHVI TTRKIVNEVR 60 FQQCSTLSNK NNKKRQEETK NKNAVVVCLE QNNENPRQIN DVVHQKFRGV RRRRWGRFAA 120 EIRDPRLGRR RWLGTYDTAE EAALVYDRAA IDCRGADAVT NIIKPPQKKR SVKDEFVCDR 180 NGYFGDNVSV EDCNGSSSYS QESVSEIWSE RMNDQEWIKE ITGEEYLDDG FTFVDESYGS 240 CSYYEPVLPT MVSNESDCIV DTIPFHLEED FESCEWEVNN YFNESLEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-18 | 105 | 161 | 1 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g010340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146613 | 0.0 | BT146613.1 Medicago truncatula clone JCVI-FLMt-14H5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013444027.1 | 0.0 | ethylene-responsive transcription factor CRF6 | ||||
TrEMBL | A0A396GF32 | 0.0 | A0A396GF32_MEDTR; Putative transcription factor AP2-EREBP family | ||||
STRING | XP_004510277.1 | 6e-64 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-21 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g010340.1 |
Entrez Gene | 25500226 |
Publications ? help Back to Top | |||
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