PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g009730.1 | ||||||||
Common Name | MTR_8g009730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22345.2 Da PI: 4.7384 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.2 | 1.3e-19 | 11 | 108 | 2 | 99 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 C C+++rr+ +dC + +yf a+++++f++v ++ G s+++++++a+++ +r+++++sl+ e+e++ +P +G +g+ l+l ql+++ el+ Medtr8g009730.1 11 CLLCRHMRRRHDADCEFGQYFSANRNADFQIVIHILGLSRLIRIMRAIEPPQRQAVANSLLTEGEVWRINPDRGFLGHQLELGAQLNTSLDELD 104 999*************************************************************************************999998 PP DUF260 96 llke 99 +++ Medtr8g009730.1 105 IARK 108 8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.737 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-18 | 11 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVQRNRRAIV CLLCRHMRRR HDADCEFGQY FSANRNADFQ IVIHILGLSR LIRIMRAIEP 60 PQRQAVANSL LTEGEVWRIN PDRGFLGHQL ELGAQLNTSL DELDIARKLL AFCIDNANSN 120 NAPSSMPPST QIPDLNLDLW GTEHMNDMDI TEEDMQGIPC TREKGESSNA SKGMVADEKE 180 KGILNEQGAT SDEDEDRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g009730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072TMD2 | 1e-145 | A0A072TMD2_MEDTR; DUF260 family protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 7e-14 | LOB domain-containing protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g009730.1 |
Entrez Gene | 25500173 |
Publications ? help Back to Top | |||
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