PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g006825.1
Common NameMTR_8g006825
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 210aa    MW: 23706.8 Da    PI: 10.0879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g006825.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-1795145255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeA  a+++a  k++g
  Medtr8g006825.1  95 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETEEEAGLAYDRATFKIRG 145
                      8********.***********9998..*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.77E-3294155No hitNo description
SuperFamilySSF541712.09E-2295154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3095154IPR001471AP2/ERF domain
PfamPF008478.9E-1395145IPR001471AP2/ERF domain
SMARTSM003804.8E-3595159IPR001471AP2/ERF domain
PROSITE profilePS5103224.05295153IPR001471AP2/ERF domain
PRINTSPR003671.5E-1296107IPR001471AP2/ERF domain
PRINTSPR003671.5E-12135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDASILMSCD FNPSFESVDQ IQHHLFDLDK HQNDFHSLIM NTNSTHHASD PSSHDSFTSP  60
TLVVNNTDNV NDAACKNGSS SMIHKPHIPI PEWKRYRGVR RRPWGKFAAE IRDPKKNGAR  120
VWLGTYETEE EAGLAYDRAT FKIRGRKAKL NFPHLIGSKE PTNVVVASKN SLSEANYEPS  180
GGIIKKKKKN LVDVLNRLAN NRWKIKCRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-3094153160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g006825.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443814.11e-156ethylene-responsive transcription factor 1
TrEMBLA0A072TJX51e-155A0A072TJX5_MEDTR; Ethylene response factor
STRINGGLYMA03G26520.13e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]