PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g006410.1 | ||||||||
Common Name | MTR_8g006410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23121.4 Da PI: 5.668 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.3e-18 | 51 | 101 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g++v+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Medtr8g006410.1 51 TYRGVRKRN-WGKFVCEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 101 69****887.**********854...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.4E-32 | 51 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 51 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-34 | 51 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-13 | 51 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 51 | 109 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.37E-31 | 52 | 110 | No hit | No description |
PRINTS | PR00367 | 4.6E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEKHINMESD ADDTSSTPSF SSSTSSNSDT KEESKKRQRS TEVENNSTHP TYRGVRKRNW 60 GKFVCEIREP KKKSRIWLGT YPTAEMAARA HDVAALAIKG HSAYLNFPEL VQQLPKPIST 120 STKDIQAAAA KAANTVFVAE PIQEEHFSSS SSTFTNNDDA TLFDLPDLFP DDGNNGLCSY 180 SSKNSSWYLC AVDSGFRLEE PSFWEKY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-18 | 46 | 108 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g006410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144591 | 2e-46 | AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626728.1 | 1e-154 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 2e-56 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | G7LBN2 | 1e-153 | G7LBN2_MEDTR; Ethylene response factor | ||||
STRING | AET01204 | 1e-154 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g006410.1 |
Entrez Gene | 11442235 |
Publications ? help Back to Top | |||
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