PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g005960.1 | ||||||||
Common Name | MTR_8g005960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SBP | ||||||||
Protein Properties | Length: 328aa MW: 36196.6 Da PI: 8.5986 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.9 | 2.1e-41 | 186 | 263 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ Medtr8g005960.1 186 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQH 263 6**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-35 | 180 | 248 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.394 | 184 | 261 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 185 | 264 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-31 | 187 | 260 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MLDYEWGNPS NIMLTGNEDN SGAAATDQAH RQIFDHYASQ AMLSDNYLNG PGGGPTIDIN 60 SGDFTHHHNQ FSPHNQQHHN IHQSFFDPRA FHGGSSTASS YPPPQPQPPP SMLSLDPLPG 120 HGHSPGFLLV PKSEDVNRPI DFVGSRLGLN LGGRTYFSSE DDFVTRLYRR SRPPEPGSTG 180 SSNSPRCQAE GCNADLSQAK HYHRRHKVCE FHSKAATVVA AGLTQRFCQQ CSRFHLLSEF 240 DNGKRSCRKR LADHNRRRRK TQHPNTQDIH KSHNTLDSSA TRSPPESGTQ STSSVTVAVS 300 PPDYFRQRSY QTPSPSTTSS SMFFSTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-33 | 177 | 260 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.14343 | 0.0 | flower |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g005960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182815 | 0.0 | AC182815.52 Medicago truncatula chromosome 8 clone mth2-177e24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626693.1 | 0.0 | squamosa promoter-binding-like protein 8 | ||||
TrEMBL | G7LBJ7 | 0.0 | G7LBJ7_MEDTR; Putative transcription factor SBP family | ||||
STRING | AET01169 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6801 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 3e-71 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g005960.1 |
Entrez Gene | 11431467 |
Publications ? help Back to Top | |||
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