PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g451170.1
Common NameMTR_7g451170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 413aa    MW: 47441.4 Da    PI: 9.6751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g451170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-15191237148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT  Ed  lv++v  +G ++W++Ia+ +  gR +kqc++rw+++l
  Medtr7g451170.1 191 KGQWTSNEDRVLVQLVDHFGLRNWSRIAKFLK-GRIGKQCRERWNNHL 237
                      799****************************9.*************97 PP
2Myb_DNA-binding58.12.1e-18243285145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eEd++l++a+k  G++ W+ I+r+++ gRt++++k++w+
  Medtr7g451170.1 243 KDSWTEEEDKILIEAHKIVGNK-WTEISRRLP-GRTENSIKNHWN 285
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.461186241IPR017930Myb domain
SuperFamilySSF466892.47E-30188284IPR009057Homeodomain-like
SMARTSM007175.0E-13190239IPR001005SANT/Myb domain
PfamPF002491.9E-14191237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-27192245IPR009057Homeodomain-like
CDDcd001674.18E-12194237No hitNo description
SMARTSM007171.4E-17242290IPR001005SANT/Myb domain
PROSITE profilePS5129421.547242292IPR017930Myb domain
PfamPF002492.7E-16243285IPR001005SANT/Myb domain
CDDcd001671.68E-13245288No hitNo description
Gene3DG3DSA:1.10.10.602.6E-21246290IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVHSQLGSNI SPPPSHYTTY LYQSQCNQLK KDLLNEANHD SSFSAMVPSP INPFPLIPTH  60
RYKATHTNGS QREFISARNP MVFSPNHNKM EDIHGRLNTS KGIWDLSTKN IFQYGETSQP  120
WVSPSLSPSL AYDAHQSVSV NPELQGDLSR NVGIGNKSQE NDQRFVLSGQ KRRKRIQNNN  180
EIQHKDPNQI KGQWTSNEDR VLVQLVDHFG LRNWSRIAKF LKGRIGKQCR ERWNNHLRPD  240
IKKDSWTEEE DKILIEAHKI VGNKWTEISR RLPGRTENSI KNHWNATKRR QNPKRKNRGK  300
SSKGILLLKY IMEVTDAKEV EKEPMTYSTS MMDIKNQLNF ESSKSDFRTE GLTTPENKIC  360
EYVPMMFNGD DGMASGSGTT MNYEFGSYGI EFFPEVPLNQ EIDLMEMINK NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-431872913107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g451170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456909.10.0transcription factor MYB98
TrEMBLA0A072TYA60.0A0A072TYA6_MEDTR; SWI3, ADA2, N-CoR and tfiiib DNA-binding domain protein
STRINGAES786300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-58myb domain protein 98
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]