PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g450950.1
Common NameMTR_7g450950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 339aa    MW: 38857.4 Da    PI: 5.6155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g450950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-14157203148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed +lv  v +lG++ W+ Ia+ +  g+t+kqc +rw ++l
  Medtr7g450950.1 157 KGKWTADEDSILVMFVSLLGPKKWSYIAEFLD-GKTGKQCWERWTNHL 203
                      79******************************.************996 PP
2Myb_DNA-binding59.76.5e-19209253147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W +eEd++l++a+k+ G++ W+ I+++++ gRt++++k++w++ 
  Medtr7g450950.1 209 KGPWNEEEDKILIEAHKEVGNK-WAEISKRLP-GRTENSIKNHWNTT 253
                      79********************.*********.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.58152203IPR017930Myb domain
SuperFamilySSF466893.74E-29155250IPR009057Homeodomain-like
SMARTSM007171.0E-10156205IPR001005SANT/Myb domain
PfamPF002491.7E-12157203IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-21158208IPR009057Homeodomain-like
CDDcd001675.77E-10159203No hitNo description
PROSITE profilePS5129425.766204258IPR017930Myb domain
SMARTSM007173.9E-18208256IPR001005SANT/Myb domain
PfamPF002491.4E-17209253IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-23209255IPR009057Homeodomain-like
CDDcd001671.29E-13211254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKPEISTMVS LPPLNEANHH FVLASIGHSS TGPFLMIPTP SFKPTHTNET IEGVVNNSDS  60
MAFVTNNGKM EAVHGYLNTN KDFWNCYQNN SLQSGETSES QLQEMMFKLK EHLYSVDRAQ  120
NNLMDVDQGL VLSDKNQQKS DHIKNNEILT KTSNTIKGKW TADEDSILVM FVSLLGPKKW  180
SYIAEFLDGK TGKQCWERWT NHLQSDIRKG PWNEEEDKIL IEAHKEVGNK WAEISKRLPG  240
RTENSIKNHW NTTKRSLKHK MKENRSRNGS KGKLLQNYIR EVTVAQEFEK EMMDNVNEDC  300
NNDFNYEDWT TQEDDVGGYV DGNEMKYGYG IMDYEVGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-371562553102MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-3715625557156MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-3715625557156MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-371562553102C-Myb DNA-Binding Domain
1msf_C2e-371562553102C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g450950.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072U9H10.0A0A072U9H1_MEDTR; Myb-like DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-49myb domain protein 98
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]