PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g445950.1
Common NameMTR_7g445950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 185aa    MW: 21287.1 Da    PI: 9.4174
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g445950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18122156135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+C t++T++WR+gp g+ +LCnaCGl+y+++gl
  Medtr7g445950.1 122 CSHCETKETTQWREGPLGKNSLCNACGLRYKLNGL 156
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-18116170IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-13119159No hitNo description
Gene3DG3DSA:3.30.50.105.2E-16119158IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.587120171IPR000679Zinc finger, GATA-type
CDDcd002023.16E-17121173No hitNo description
PfamPF003202.6E-16122156IPR000679Zinc finger, GATA-type
PROSITE patternPS003440122147IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MANLREEQDL SKDEVGQYWQ SSSLGKLDYI PQEALENLEW YTTFWDDMEK LDKVIKLDEL  60
KGERKTQENP SFNVSSVQIN HQRICSDSET KETTQKPLRR TKVKSCSIKK SRAKKFIGER  120
SCSHCETKET TQWREGPLGK NSLCNACGLR YKLNGLVKGY RPKASPAFDI RNHSNLHKKV  180
MGKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g445950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448355.11e-136GATA transcription factor 3
TrEMBLA0A072TYA01e-135A0A072TYA0_MEDTR; GATA type zinc finger transcription factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1898726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.22e-25GATA transcription factor 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]