PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g116890.6
Common NameMTR_7g116890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 426aa    MW: 45642.4 Da    PI: 8.8064
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g116890.6genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_162.48.4e-20279341163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK+ae eeL++kv++L ae  +L++e+++l +++++l++e+
  Medtr7g116890.6 279 ERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMEN 341
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.6E-38197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.1E-27130260No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-15273339No hitNo description
PfamPF001705.3E-18279341IPR004827Basic-leucine zipper domain
SMARTSM003386.7E-18279343IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.219281344IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-9282338No hitNo description
CDDcd147023.82E-20284332No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGNSDEEKST KTEKPSSPVT VDQTNQTNVH VYPDWAAMQA YYGPRVAMPP YYNSPVASGH  60
TPHPYMWGPP QPMMPPYGHP YAAMYPHGGV YTHPAVPIGP HPHSQGISSS PATGTPLSIE  120
TPPKSSGNTD QGLMKKLKGF DGLAMSIGNG HAESAEPGAE SRQSQSVNTE GSSDGSDGNT  180
SGANQTRRKR SREGTPTTDG EGKTNTQGSQ ISKEIAASDK MMAVAPAGVT GQLVGPVASS  240
AMTTALELRN SSSVHSKTNP TSTPQPSAVL PPEAWIQNER ELKRERRKQS NRESARRSRL  300
RKQAEAEELA RKVESLNAES ASLRSEINRL AENSERLRME NAALKEKFKI AKLGQPKEII  360
LTNIDSQRTT PVSTENLLSR VNNNSGSNDR TVEDENGYCD NKPNSGAKLH QLLDASPRAD  420
AVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRLRK
2295302RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.20710.0glandular trichome| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g116890.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1390120.0BT139012.1 Medicago truncatula clone JCVI-FLMt-18F5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626529.10.0common plant regulatory factor 1 isoform X2
SwissprotQ990891e-146CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLG7L3Z70.0G7L3Z7_MEDTR; BZIP transcription factor family protein
STRINGAES827470.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-107G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]