PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g116890.3 | ||||||||
Common Name | MTR_7g116890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bZIP | ||||||||
Protein Properties | Length: 426aa MW: 45642.4 Da PI: 8.8064 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 62.4 | 8.4e-20 | 279 | 341 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL++kv++L ae +L++e+++l +++++l++e+ Medtr7g116890.3 279 ERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMEN 341 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 9.6E-38 | 1 | 97 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 8.1E-27 | 130 | 260 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-15 | 273 | 339 | No hit | No description |
Pfam | PF00170 | 5.3E-18 | 279 | 341 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 6.7E-18 | 279 | 343 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.219 | 281 | 344 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.5E-9 | 282 | 338 | No hit | No description |
CDD | cd14702 | 3.82E-20 | 284 | 332 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 286 | 301 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MGNSDEEKST KTEKPSSPVT VDQTNQTNVH VYPDWAAMQA YYGPRVAMPP YYNSPVASGH 60 TPHPYMWGPP QPMMPPYGHP YAAMYPHGGV YTHPAVPIGP HPHSQGISSS PATGTPLSIE 120 TPPKSSGNTD QGLMKKLKGF DGLAMSIGNG HAESAEPGAE SRQSQSVNTE GSSDGSDGNT 180 SGANQTRRKR SREGTPTTDG EGKTNTQGSQ ISKEIAASDK MMAVAPAGVT GQLVGPVASS 240 AMTTALELRN SSSVHSKTNP TSTPQPSAVL PPEAWIQNER ELKRERRKQS NRESARRSRL 300 RKQAEAEELA RKVESLNAES ASLRSEINRL AENSERLRME NAALKEKFKI AKLGQPKEII 360 LTNIDSQRTT PVSTENLLSR VNNNSGSNDR TVEDENGYCD NKPNSGAKLH QLLDASPRAD 420 AVAAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 301 | RRSRLRK |
2 | 295 | 302 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2071 | 0.0 | glandular trichome| pod| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g116890.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139012 | 0.0 | BT139012.1 Medicago truncatula clone JCVI-FLMt-18F5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626529.1 | 0.0 | common plant regulatory factor 1 isoform X2 | ||||
Swissprot | Q99089 | 1e-146 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | G7L3Z7 | 0.0 | G7L3Z7_MEDTR; BZIP transcription factor family protein | ||||
STRING | AES82747 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-107 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g116890.3 |
Entrez Gene | 11431340 |
Publications ? help Back to Top | |||
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